rnalysis.filtering.CountFilter
==============================

.. currentmodule:: rnalysis.filtering

.. autoclass:: CountFilter

   
   
   
    .. automethod:: __init__
    
    

   
.. autosummary::
    :toctree: .
    
    CountFilter.average_replicate_samples
    CountFilter.biotypes_from_gtf
    CountFilter.biotypes_from_ref_table
    CountFilter.box_plot
    CountFilter.clustergram
    CountFilter.describe
    CountFilter.difference
    CountFilter.differential_expression_deseq2
    CountFilter.differential_expression_limma_voom
    CountFilter.drop_columns
    CountFilter.enhanced_box_plot
    CountFilter.filter_biotype_from_gtf
    CountFilter.filter_biotype_from_ref_table
    CountFilter.filter_by_attribute
    CountFilter.filter_by_go_annotations
    CountFilter.filter_by_kegg_annotations
    CountFilter.filter_by_row_name
    CountFilter.filter_by_row_sum
    CountFilter.filter_duplicate_ids
    CountFilter.filter_low_reads
    CountFilter.filter_missing_values
    CountFilter.filter_percentile
    CountFilter.filter_top_n
    CountFilter.find_paralogs_ensembl
    CountFilter.find_paralogs_panther
    CountFilter.fold_change
    CountFilter.from_dataframe
    CountFilter.from_folder
    CountFilter.from_folder_htseqcount
    CountFilter.head
    CountFilter.intersection
    CountFilter.ma_plot
    CountFilter.majority_vote_intersection
    CountFilter.map_orthologs_ensembl
    CountFilter.map_orthologs_orthoinspector
    CountFilter.map_orthologs_panther
    CountFilter.map_orthologs_phylomedb
    CountFilter.normalize_median_of_ratios
    CountFilter.normalize_rle
    CountFilter.normalize_tmm
    CountFilter.normalize_to_quantile
    CountFilter.normalize_to_rpkm
    CountFilter.normalize_to_rpm
    CountFilter.normalize_to_rpm_htseqcount
    CountFilter.normalize_to_tpm
    CountFilter.normalize_with_scaling_factors
    CountFilter.number_filters
    CountFilter.pairplot
    CountFilter.pca
    CountFilter.plot_expression
    CountFilter.print_features
    CountFilter.save_csv
    CountFilter.save_parquet
    CountFilter.save_table
    CountFilter.scatter_sample_vs_sample
    CountFilter.sort
    CountFilter.sort_by_principal_component
    CountFilter.split_by_attribute
    CountFilter.split_by_percentile
    CountFilter.split_by_principal_components
    CountFilter.split_by_reads
    CountFilter.split_clicom
    CountFilter.split_hdbscan
    CountFilter.split_hierarchical
    CountFilter.split_kmeans
    CountFilter.split_kmedoids
    CountFilter.symmetric_difference
    CountFilter.tail
    CountFilter.text_filters
    CountFilter.transform
    CountFilter.translate_gene_ids
    CountFilter.union
    CountFilter.violin_plot